1 min readfrom Machine Learning

Notes on Hamiltonian Monte Carlo from a purely probabilistic perspective [P]

Our take

Delve into Hamiltonian Monte Carlo (HMC) with a fresh perspective. These notes, available at [https://doi.org/10.5281/zenodo.21841087](https://doi.org/10.5281/zenodo.21841087), offer a purely probabilistic explanation of HMC, bypassing traditional physics-based justifications. The exposition systematically develops the method, beginning with auxiliary variables and culminating in discussions of reversibility and volume preservation. Understand *why* HMC works—a valuable resource for those seeking a deeper understanding of this powerful MCMC technique. For

The recent sharing of notes on Hamiltonian Monte Carlo (HMC) from a purely probabilistic perspective is a welcome contribution to the field, particularly for those grappling with the often-intimidating physics-based foundations of this powerful MCMC method. Many practitioners find themselves applying HMC with a functional understanding, but lacking a deeper grasp of *why* it works so effectively. This resource, aiming to build HMC from first principles within the realm of probability and Markov chains, directly addresses that need. It’s a shift in approach that resonates with a broader desire for transparency and explainability within increasingly complex AI models. The shift away from relying on physics intuition aligns with a broader trend of demystifying advanced techniques, making them more accessible to a wider audience—a sentiment echoed in discussions around the challenges of communicating complex ideas, as seen in the debate surrounding the Neurips workshop page limits [Epistemic Intelligence in Machine Learning Neurips Workshop page limit?]. This resonates with a common frustration in the community, where understanding the underlying mechanics is often sacrificed for immediate application.

The author’s focus on developing HMC from an auxiliary variable perspective, progressing through Markov chain construction, Hamiltonian dynamics, and crucial properties like reversibility and volume preservation, offers a more grounded and arguably more intuitive pathway to understanding. While the physics analogy can be a powerful teaching tool, it can also be a barrier to entry for those without a strong physics background. By stripping away that prerequisite, these notes unlock HMC for a larger segment of the machine learning community, particularly those focused on probabilistic modeling and Bayesian inference. Considering the ongoing discussions around conference attendance and resource allocation [EMNLP 2026 Findings : worth attending in person?], providing readily accessible, high-quality educational resources like these is invaluable for democratizing knowledge and fostering broader participation. The fact that the author is actively soliciting feedback demonstrates a commitment to continuous improvement and a genuine desire to share their insights with the community. It’s a refreshing contrast to the often-opaque nature of some research publications.

The significance of this development lies not just in the accessibility it provides, but also in the potential for deeper innovation. A probabilistic understanding of HMC could lead to novel variations and optimizations of the algorithm, tailored to specific problem domains. The current implementation often relies on pre-defined physics parameters, and a deeper understanding of the probabilistic underpinnings might allow for more adaptive and efficient parameter selection. Moreover, the focus on reversibility and volume preservation, core tenets of HMC’s efficiency, highlights the importance of these properties in ensuring accurate sampling from complex posterior distributions. This is particularly relevant as machine learning models continue to grow in complexity, demanding more sophisticated sampling techniques. The generosity of sharing computational resources [I have a mid-sized GPU cluster and was thinking about giving free compute] also points to a growing collaborative spirit within the AI community, fostering an environment where knowledge and tools are freely shared.

Ultimately, this work encourages us to question the necessity of relying solely on established analogies when explaining complex algorithms. It suggests that a more fundamental, probabilistic approach can not only demystify existing techniques but also pave the way for new discoveries. As we move towards increasingly sophisticated AI models and sampling methods, will we see a greater emphasis on developing explanations rooted in the underlying mathematical principles, rather than relying on borrowed concepts from other disciplines? The future of MCMC, and perhaps AI more broadly, may depend on our ability to build a deeper, more intuitive understanding of the tools we wield.

I’ve been studying Hamiltonian Monte Carlo and wrote a set of notes explaining HMC without relying on the usual physics-based motivation.

The notes develop HMC from a probabilistic/MCMC perspective, starting from introducing an auxiliary variable, constructing the corresponding Markov chain, and then covering Hamiltonian dynamics, leapfrog integration, reversibility and volume preservation.

The goal was to understand why HMC works rather than treating the physics analogy as a prerequisite.

I’m sharing them here in case they’re useful to others learning HMC. I’d also appreciate any feedback, particularly if you notice errors or places where the exposition could be improved.

https://doi.org/10.5281/zenodo.21841087

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